GgaEX0008676 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12851944-12853626:-
Coord C1 exon
chr5:12853457-12853626
Coord A exon
chr5:12852639-12852795
Coord C2 exon
chr5:12851944-12852053
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTATGTGCTTTTATGAACAGGGA
3' ss Score
8.3
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCTTCAGAAAACTTCATTTATTCTTGTGCAGGATGCTGTGTCGCTACTTATGTCCTGGGAATTTGTGACCGCCACAACGATAACATAATGCTTCGAAACACAGGGCATATGTTTCACATTGACTTTGGAAAGTTTCTGGGTCACGCGCAAATGTTTGGTAGCTTTAAAAG
Seq A exon
GGATCGGGCTCCATTTGTGCTAACATCTGACATGGCTTATGTCATTAATGGTGGTGAAAAACCCACTATTCGCTTTCAGTTGTTTGTGGATCTCTGTTGTCAAGCTTACAATTTGATAAGGAAACATGCAAACCTCTTCCTTAACCTACTTTCCCTG
Seq C2 exon
ATGCTTTCTTCTGGGTTACCTGAACTAAGTGGGGTGCAGGACTTGAAGTACGTCCAGGATGCTCTCCAACCTCAAACAACAGATGCAGAAGCTACCATTTTCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'30-31,'30-30,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
C2:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTGCAGGATGCTGTGTC
R:
TGGTAGCTTCTGCATCTGTTGT
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]