RnoEX6004454 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185313448-185315254:+
Coord C1 exon
chr1:185313448-185313617
Coord A exon
chr1:185314358-185314514
Coord C2 exon
chr1:185315145-185315254
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGTGCTTTCAACAGGGA
3' ss Score
10.94
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
GCTTCTGAGAACTTTATCTACTCTTGTGCTGGGTGCTGTGTAGCCACTTATGTTTTAGGCATTTGTGATCGGCACAATGACAATATAATGCTTCGAAGCACAGGACACATGTTCCACATTGACTTTGGAAAGTTTTTGGGCCATGCACAGATGTTTGGTAGCTTCAAAAG
Seq A exon
GGACCGCGCTCCTTTCGTGCTTACCTCTGACATGGCCTATGTCATTAATGGAGGTGAAAAGCCCACCATTCGTTTCCAGTTGTTTGTGGACCTCTGCTGTCAAGCCTACAACTTGATAAGAAAGCAAACAAACCTCTTTCTTAACCTTCTCTCACTG
Seq C2 exon
ATGATTCCTTCAGGATTGCCAGAACTTACAAGTATTCAGGATTTGAAATATGTTAGAGATGCACTTCAGCCCCAAACTACAGATGCTGAAGCTACTATTTTCTTTACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479-'38-47,'38-46,39-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
C2:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCTTGTGCTGGGTGCTG
R:
TCAGCATCTGTAGTTTGGGGC
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]