GgaEX0008757 @ galGal3
Exon Skipping
Gene
ENSGALG00000006169 | LIMA1
Description
NA
Coordinates
chrE22C19W28_E50C23:232880-237012:+
Coord C1 exon
chrE22C19W28_E50C23:232880-233004
Coord A exon
chrE22C19W28_E50C23:234794-234901
Coord C2 exon
chrE22C19W28_E50C23:236955-237012
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTAAGTGCTTTATTCTATAGAAT
3' ss Score
6.61
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATAAGGTAGAGACCAAGAAAAGCCTGGAGATGCCTCGCTTAACAGAAACTTCAATAAAGGATAGGTTGGCAAAGTATCAGGCAGCTGTGTCCAAGCAGGGCAGTTCCACAGGCCTTGTGACCACG
Seq A exon
AATGAGATTCAAGCCAGTGAAAGTGAACTCAAGAATTACAAATCTGAGCAGAAGGAGAATATGCCACCAAGTTTTGAGGACTGCATTTCCTATCAGGATGGGGAGAAG
Seq C2 exon
GTTTCTGTGGGTGAGAACAGCCTATCTTTCCACTCCAGCCTTTCAGAGGATGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006169-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.861 C2=0.683
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAGACCAAGAAAAGCCTGG
R:
ATTCCCATCCTCTGAAAGGCTG
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]