MmuEX6056466 @ mm10
Exon Skipping
Gene
ENSMUSG00000023022 | Lima1
Description
LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992]
Coordinates
chr15:99796742-99806571:-
Coord C1 exon
chr15:99806423-99806571
Coord A exon
chr15:99802111-99802212
Coord C2 exon
chr15:99796742-99796799
Length
102 bp
Sequences
Splice sites
3' ss Seq
GGTTATTTTTTATTTTGTAGAAT
3' ss Score
7.96
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACGAGAGTAAGAGGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACACA
Seq A exon
AATGAGCTGAAAACCAGTGAAAGCAAAACTCATAAATGGGAACAGAAGGAGAATGTGCCCCCAGGTCCCGAGGCCTGCAGCGTCCATCAGGAAGGAAGCAAG
Seq C2 exon
GTTTCTACAACTGAGAATAGTCTAGTGGCCCTCTCTGTCCCTGCTGAAGATGACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023022-'25-22,'25-21,30-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=1.000 C2=0.662
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCTTCCTCTGCATTCAACTCG
R:
AGGTGTCATCTTCAGCAGGGA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types