RnoEX6034051 @ rn6
Exon Skipping
Gene
ENSRNOG00000059801 | Lima1
Description
LIM domain and actin binding 1 [Source:RGD Symbol;Acc:1564050]
Coordinates
chr7:141445487-141456403:-
Coord C1 exon
chr7:141456255-141456403
Coord A exon
chr7:141452321-141452422
Coord C2 exon
chr7:141445487-141445544
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTATTTTTTATTTTGTAGAGT
3' ss Score
9.49
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTCATTTGTCTTCCTCTGCCTTCAACTCGGAGAAAAATGAGAGTAAGCGGAATCTGGAGCTGCCACGCCTCTCTGAGACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCCGTGTCCAAGCAGAGCAGCCCAGCCAGCTACGCA
Seq A exon
AGTGAGCTGAAACCCAGTGAAAGCAAAACTCACAAATGGGAGCAGAAGGAGAACGTGCCCCCCGGCCCCGAGGCCTGCAGCATCCATCAGGAAGGGAGCAAG
Seq C2 exon
GTTTCTGCAACTGAGAATAGCCTGGTGGCCCACCCTGTCCCTGCAGAAGATGACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059801-'17-8,'17-7,19-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.945 A=0.980 C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000091702fB7889
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCTTCCTCTGCCTTCAACT
R:
AGGTGTCATCTTCTGCAGGGA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]