GgaEX1033396 @ galGal4
Exon Skipping
Gene
ENSGALG00000006169 | LIMA1
Description
LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636]
Coordinates
chrLGE22C19W28_E50C23:256292-260448:+
Coord C1 exon
chrLGE22C19W28_E50C23:256292-256440
Coord A exon
chrLGE22C19W28_E50C23:258230-258337
Coord C2 exon
chrLGE22C19W28_E50C23:260391-260448
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTAAGTGCTTTATTCTATAGAAT
3' ss Score
6.61
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGCAAGTCCAGCACTCAGCCCAGATAAGGTAGAGACCAAGAAAAGCCTGGAGATGCCTCGCTTAACAGAAACTTCAATAAAGGATAGGTTGGCAAAGTATCAGGCAGCTGTGTCCAAGCAGGGCAGTTCCACAGGCCTTGTGACCACG
Seq A exon
AATGAGATTCAAGCCAGTGAAAGTGAACTCAAGAATTACAAATCTGAGCAGAAGGAGAATATGCCACCAAGTTTTGAGGACTGCATTTCCTATCAGGATGGGGAGAAG
Seq C2 exon
GTTTCTGTGGGTGAGAACAGCCTATCTTTCCACTCCAGCCTTTCAGAGGATGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006169-'12-10,'12-8,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.852 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAAGTCCAGCACTCAGC
R:
CCCATCCTCTGAAAGGCTGGA
Band lengths:
203-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]