DreEX6081892 @ danRer10
Exon Skipping
Gene
ENSDARG00000101441 | LIMA1
Description
LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636]
Coordinates
chr23:36354534-36359583:+
Coord C1 exon
chr23:36354534-36354640
Coord A exon
chr23:36357439-36357516
Coord C2 exon
chr23:36359538-36359583
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCCTGCCTCTGATAGAGT
3' ss Score
7.5
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AAAGTCTGGAGTGTGGGGTAAAAATGCTGGATTCAACCCCTCTCAGGGACAGGATGGCCATGTACCAGGCAGCTGTGACTAAGCTTGATTTCCCATCCTCCCCCAAT
Seq A exon
AGTGAAGCAGCAGACAGTGAAGCCCGAGCTCACAGTGGAAAACAAAAGGAAAATGTGCCACCAGTGTCTGCTGATGTG
Seq C2 exon
TGCCCCGAATCCAACACTATCAAAAGTCCTGCTCCAGACAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101441-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGTGGGGTAAAAATGCT
R:
TCCTGTCTGGAGCAGGACTTT
Band lengths:
144-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]