BtaEX6020743 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012342 | LIMA1
Description
LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636]
Coordinates
chr5:29876997-29884971:+
Coord C1 exon
chr5:29876997-29877145
Coord A exon
chr5:29880185-29880292
Coord C2 exon
chr5:29884908-29884971
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGACTATTTTTATTTTGTAGAAT
3' ss Score
7.68
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTCAGCTGTCATCTTCAGCACTCAACTCAGAGAAAAGAGAGAGTAGGCGAAATCTAGAATTTCCACGCCTGTCAGAAACCTCCATAAAGGATCGAATGGCCAAGTACCAGGCAGCTGTGTCCAAGCAAAGCAGTTCTTCGAGCTATACA
Seq A exon
AATGAGTTGAGAGCCAGTGGTGGTGAAATCAAAACTCATAAATTGGAGCAAAAGGAGAATGTGCCCCCAGGTCCTGAGGTCTGCATCTCCTACCCAGATGGAGAAAAG
Seq C2 exon
GTTTCTGCATCTGAGAATAGCCTGGCAGCCCATTCCACCCTTGCTGAAGATGATTCCCGTAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012342-'10-8,'10-7,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.935 C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCTTCAGCACTCAACTCA
R:
ACGGGAATCATCTTCAGCAAGG
Band lengths:
203-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]