GgaEX0008759 @ galGal3
Exon Skipping
Gene
ENSGALG00000006169 | LIMA1
Description
NA
Coordinates
chrE22C19W28_E50C23:237571-240742:+
Coord C1 exon
chrE22C19W28_E50C23:237571-237686
Coord A exon
chrE22C19W28_E50C23:238714-238926
Coord C2 exon
chrE22C19W28_E50C23:240609-240742
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTCCTATTTGTCTTTTCCAGCTT
3' ss Score
10.51
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTGGACAAAACCTGGAGAGCGAGACAGAAGTTCAGAAACCTGTCAGCACAAAACAGCAAAACTTTGGCTCCAAATCACTTGGCCAGACAGATGCATCTCTGCCAAAAACGGTGAAG
Seq A exon
CTTCTGTTTCCTGTTCTTGGTTCCTAATCTCTACTCCTGCCTTCTGCTTCCCTCCTAATGTGAGCTCAACTCTCAGCTTTCTCTCAAGTTCTTTACTTATTGGGCCTCACCTTCCTCCTGTAGCTCCTATTTGTAGTATGCCTGGAAAAGAATTTCTTTCTCTTCACACCCCAAAACACCTCTCCATCAGACACAGGGCTCATTGCTATACAA
Seq C2 exon
AAGTTTCAGTTGCCAGCAAAGGAAACCTGCGTTGGGTGTCAGAAGACAGTGTACCCAATGGAAAGGCTCCTTGCCAACCAGCAGGTGTTCCACATCAGCTGTTTCCGCTGTTCCTATTGCAACAGTAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006169-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.752 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(61.4=77.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAAACCTGGAGAGCGAG
R:
TGAGTTTACTGTTGCAATAGGAAC
Band lengths:
247-460
Functional annotations
There are 0 annotated functions for this event