MmuEX0026433 @ mm9
Exon Skipping
Gene
ENSMUSG00000023022 | Lima1
Description
LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992]
Coordinates
chr15:99613951-99624949:-
Coord C1 exon
chr15:99624840-99624949
Coord A exon
chr15:99617756-99617814
Coord C2 exon
chr15:99613951-99614084
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCCTATTTGTCTCTTCCAGCCT
3' ss Score
9.7
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTAACTCCCAGGTGAAGAGCGAGGCCCAGCAGCCTATGCACCCTAAGCCGCTGAGTCCTGACGCCAGGACCTCCAGTCTTCCGGAAAGTTCTCCTTCCAAAACAGCGAAG
Seq A exon
CCTCTGCGTCCTGCTCCTGGCACCTAATCTCTGTTCCTGCCTTCCACTTTCCTCCTAAT
Seq C2 exon
AAGTTTCAGGCGCCGGCAAAGGAGAGCTGCGTGGAGTGTCAGAAGACGGTGTACCCCATGGAACGGCTCCTGGCCAACCAGCAGGTGTTTCACATCAGCTGTTTCCGATGCTCCTACTGCAACAACAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023022-'15-16,'15-14,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(61.4=77.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCAGTCTTCCGGAAAGT
R:
TGTGAAACACCTGCTGGTTGG
Band lengths:
136-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types