RnoEX0049978 @ rn6
Exon Skipping
Gene
ENSRNOG00000059801 | Lima1
Description
LIM domain and actin binding 1 [Source:RGD Symbol;Acc:1564050]
Coordinates
chr7:141434474-141443750:-
Coord C1 exon
chr7:141443641-141443750
Coord A exon
chr7:141437368-141437426
Coord C2 exon
chr7:141434474-141434607
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCCTATTTGTCTCTTCCAGCCT
3' ss Score
9.7
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTAACTCCCAGGGGAGGAGTGAGGCCCAGCAGCCCATATACACTAAGCCGCTGAGTCCCGACGCCAGGACCTCCAGTCTTCCGGAAAGTTCTCCTTCCAAAACAGCGAAG
Seq A exon
CCTCTGCGTCCTGCTCCTGGCACCTAATCTCTGCTCCTGCCTTCTACTTTCCTCCTAAT
Seq C2 exon
AAGTTTCAGGCACCCGCAAGAGAGAGCTGCGTGGAGTGTCAGAAGACGGTGTATCCCATGGAACGGCTCCTGGCCAACCAGCAGGTGTTTCACATCAGCTGTTTCCGATGCTCCTACTGCAACAACAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059801_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(61.4=77.8)
Main Inclusion Isoform:
ENSRNOT00000091702fB7891
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCAGTCTTCCGGAAAGT
R:
TGTGAAACACCTGCTGGTTGG
Band lengths:
136-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]