BtaEX0020209 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012342 | LIMA1
Description
LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636]
Coordinates
chr5:29886524-29893867:+
Coord C1 exon
chr5:29886524-29886633
Coord A exon
chr5:29891000-29891058
Coord C2 exon
chr5:29893734-29893867
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTTGTCTCTTCCAGCTT
3' ss Score
10.97
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTAACTCCCAGGTCAAGAGTGAGGTCCAGCAGCCTGTGCATCCCAAGCCATTAAGTCCAGATGCCAGAGCCTCCAGCCTTTCTGAAAGTTCTCCTCCCAAAGCAGTGAAG
Seq A exon
CTTCTGCTTCCTGCTCCTGGTACCTAATTTCTGCTCCTGCCCTCCACTTTCCTCCTAAT
Seq C2 exon
AAGTTTCAGGCACCCGCAAGAGAGACCTGCGTGGAATGTCAGAAAACAGTCTACTCGATGGAGCGTCTCTTGGCCAACCAGCAGGTGTTTCACATCAGCTGCTTCCGTTGTTCCTATTGCAACAGCAAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012342_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=1.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(61.4=77.8)
Main Inclusion Isoform:
ENSBTAT00000016376fB3823
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTCAAGAGTGAGGTCCA
R:
CTGACATTCCACGCAGGTCTC
Band lengths:
145-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development