GgaEX0009699 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16713591-16715289:+
Coord C1 exon
chr8:16713591-16713701
Coord A exon
chr8:16713924-16714028
Coord C2 exon
chr8:16715131-16715289
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAAAATATGTTGTGTCCTAGGTA
3' ss Score
7.61
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCTTGCCTTGCTGCTTTGGAAATCAGTACTGTTTCTGTTGAAAATGACCTGCTATGTCTGCAAGAAAAGACCAAGCTACAGGAAAACATTGTTGAAGACTGTAAAAATCAG
Seq A exon
GTACGAGAATTAAAAGCAGAAGTAGAAGTACTGAAATCCAGGTATAAAATCATCTTCAGTGAAAACAAGAGTATAAGAGAAAGCAAATGTTTAGAAGTCTATGAG
Seq C2 exon
GTGAGGGACAAAGCAGAGCCTAAGTTGAAGGTGTTAGAACATGTTTGTGGTTTACTGAAAGCAGCTGAAGGAGAACTGCGAGGATTTCAAGAAAATCTTGTCTACTGGGAAAGGATCAACACACAGAAATGCAAAACCCCCAGGGAGCTGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTTGCTGCTTTGGAAA
R:
TCCCTGGGGGTTTTGCATTTC
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]