MmuEX0032971 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145139784-145148616:+
Coord C1 exon
chr3:145139784-145139894
Coord A exon
chr3:145144312-145144416
Coord C2 exon
chr3:145148531-145148616
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTGTTGGTTTTTGTTTTTAGGTA
3' ss Score
10.86
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTGCAAGAAGTAGAAAAACGACAAAAAACCCTCGTCGAAGGATACAGGACTCAG
Seq A exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATGGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTAGAGAAG
Seq C2 exon
GTTGATGGAAACCAAAGCCTTCTGACCAAGCTTTCTCTTGAGGAAGAAAATCATCTCATTCAGTTAAAGTGTGAGAACCTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256_MULTIEX2-4/7=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.039
Domain overlap (PFAM):
C1:
PF104984=IFT57=FE(32.1=100)
A:
PF115593=ADIP=PD(22.9=91.4)
C2:
NO
Main Skipping Isoform:
ENSMUST00000098538fB13992
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACACTTGATGCCTTGAAGGA
R:
CTTTAAGGTTCTCACACTTTAACTGA
Band lengths:
196-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types