HsaEX6031930 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86822127-86826219:-
Coord C1 exon
chr1:86826109-86826219
Coord A exon
chr1:86824470-86824574
Coord C2 exon
chr1:86822127-86822285
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTAATACTTTATTTTCAGGTA
3' ss Score
8.1
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAG
Seq A exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATAGTAAAAAGCAGATGTGAAAATTTGCTACATAAAAATAACCAAATAACAAAAACCAAAAATAAAAATGTAGAGAAG
Seq C2 exon
ATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCGTGTCTGCGATTCCTTGACGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAGGGGAAGTGTGCAGACCAGGAACACACCATTAGGGAGCTTCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'17-23,'17-21,19-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.283 C2=0.160
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=FE(26.3=100),PF131661=AAA_13=FE(17.6=100)
A:
PF0003816=Filament=FE(11.1=100),PF115593=ADIP=PD(23.1=94.3),PF131661=AAA_13=FE(16.6=100),PF059116=DUF869=PU(7.4=48.6)
C2:
PF0003816=Filament=FE(17.0=100),PF131661=AAA_13=FE(25.4=100),PF059116=DUF869=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTGCTGCTTTGAAGGATGA
R:
AATGGTGTGTTCCTGGTCTGC
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)