RnoEX0062100 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251020557-251027917:+
Coord C1 exon
chr2:251020557-251020667
Coord A exon
chr2:251024312-251024416
Coord C2 exon
chr2:251027832-251027917
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGGTTTTGGTTTTAGGTA
3' ss Score
11.11
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTTCAAGAAGTAGAAAAACGACAGAAAGCCCTCGTTGAAGGATACAGAACTCAG
Seq A exon
GTACAAAAGTTGGAAGAAGCAGCCGCAATGGTGAAAAGCAGATGTAAAAATTTACTCCATGAAAATAAACTAATAATAAATAAAAAAAACACAAAGCTAGAGAAG
Seq C2 exon
GTTGATGGAAACTATAGCCTTCTGACCAAGCTTTCTCTTGAGGAGGAAAATCATCTGATTCAGTTAAAGTGTGAGAACCTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'18-24,'18-20,21-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(12.5=100),PF115593=ADIP=FE(35.0=100),PF0017016=bZIP_1=PD(41.5=45.9)
A:
PF0003816=Filament=FE(11.8=100),PF115593=ADIP=FE(33.0=100)
C2:
PF0003816=Filament=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTGATGCCTTGAAGGATGA
R:
TCTTTAAGGTTCTCACACTTTAACTG
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]