Special

MmuEX0032969 @ mm10

Exon Skipping

Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145132632-145144416:+
Coord C1 exon
chr3:145132632-145132817
Coord A exon
chr3:145136588-145136723
Coord C2 exon
chr3:145144312-145144416
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTCACTTATTTTATAAAGGCA
3' ss Score
4.63
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTCGGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGATATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAG
Seq A exon
GCAAATCGCTAACCTTTTGGAAGACTTGAGAAAAATGGAAACTCATGGGAAAAACTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCCTAAATATTGAGAATGTGAAATTAAAG
Seq C2 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATGGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256_MULTIEX2-2/7=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.058 C2=0.020
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0003816=Filament=PU(44.0=76.2)

							
A:
PF0003816=Filament=PD(21.1=50.0)

							
C2:
PF115593=ADIP=PD(22.9=91.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000096140





     
                   









    
Main Skipping Isoform:
ENSMUSP00000142932





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000029920, ENSMUSP00000096141, ENSMUSP00000101798, ENSMUSP00000142571
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr1:86371018-86371130 
HIGH PSI
HsaEX0044614
(ODF2L)
Human
(hg19)
chr1:86836701-86836836 
HIGH PSI
HsaEX0044614
(ODF2L)
Rat
(rn6)
chr2:251018657-251018792 
HIGH PSI
RnoEX0062098
(Odf2l)
Cow
(bosTau6)
chr3:57839045-57839180 
HIGH PSI
BtaEX6016795
(ODF2L)
Chicken
(galGal4)
chr8:14944314-14944449 
HIGH PSI
GgaEX0009698
(ODF2L)
Chicken
(galGal3)
chr8:16712725-16712860 
HIGH PSI
GgaEX0009698
(ODF2L)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGCTTGGAAACCCAAATAGCCA

				
R: 
TTTGCATCTACTTTTCACCATTTCA

				
Band lengths: 
234-370

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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