Special

MmuEX0032969 @ mm9

Exon Skipping

Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144795596-144807380:+
Coord C1 exon
chr3:144795596-144795781
Coord A exon
chr3:144799552-144799687
Coord C2 exon
chr3:144807276-144807380
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTCACTTATTTTATAAAGGCA
3' ss Score
4.63
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTCGGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGATATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAG
Seq A exon
GCAAATCGCTAACCTTTTGGAAGACTTGAGAAAAATGGAAACTCATGGGAAAAACTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCCTAAATATTGAGAATGTGAAATTAAAG
Seq C2 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATGGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256_MULTIEX2-2/6=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.015 A=0.062 C2=0.029
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF039809=Nnf1=PD(8.9=11.4)

							
A:
PF074396=DUF1515=FE(57.0=100),PF115593=ADIP=FE(32.8=100)

							
C2:
PF115593=ADIP=FE(26.6=100),PF059116=DUF869=FE(13.7=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000096140





     
                   









    
Main Skipping Isoform:
ENSMUSP00000073583





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000029920, ENSMUSP00000096140f2302A, ENSMUSP00000096140f2303A, ENSMUSP00000096141, ENSMUSP00000101798
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr1:86371018-86371153 
HIGH PSI
HsaEX0044614
(ODF2L)
Human
(hg19)
chr1:86836701-86836836 
HIGH PSI
HsaEX0044614
(ODF2L)
Rat
(rn6)
chr2:251018657-251018792 
HIGH PSI
RnoEX0062098
(Odf2l)
Cow
(bosTau6)
chr3:57839045-57839180 
HIGH PSI
BtaEX6016795
(ODF2L)
Chicken
(galGal4)
chr8:14944314-14944449 
HIGH PSI
GgaEX0009698
(ODF2L)
Chicken
(galGal3)
chr8:16712725-16712860 
HIGH PSI
GgaEX0009698
(ODF2L)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGCTTGGAAACCCAAATAGCCA

				
R: 
TTTGCATCTACTTTTCACCATTTCA

				
Band lengths: 
234-370

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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