MmuEX0032968 @ mm9
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144795596-144807380:+
Coord C1 exon
chr3:144795596-144795781
Coord A exon
chr3:144798589-144798698
Coord C2 exon
chr3:144807276-144807380
Length
110 bp
Sequences
Splice sites
3' ss Seq
AATGCATTATGTGTTCCTAGGAA
3' ss Score
7.2
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTCGGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGATATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAG
Seq A exon
GAAGCCAAGCTGTCTGAAACAGTTTCAGCTTCCAGTGACTGGAAAAGTCAGTTCGAGAAAATTGCCATAGAAAAAACTGAGCTGGAAGTGCAGATCGAAACAATGAAAAA
Seq C2 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATGGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256_MULTIEX2-1/6=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.037 C2=0.029
Domain overlap (PFAM):
C1:
PF039809=Nnf1=PD(8.9=11.4)
A:
PF074396=DUF1515=PU(17.7=37.8),PF115593=ADIP=PU(13.9=51.4)
C2:
PF115593=ADIP=FE(26.6=100),PF059116=DUF869=FE(13.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGAAACCCAAATAGCCA
R:
TTTGCATCTACTTTTCACCATTTCA
Band lengths:
234-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: