BtaEX6016796 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57835064-57839180:+
Coord C1 exon
chr3:57835064-57835249
Coord A exon
chr3:57838189-57838298
Coord C2 exon
chr3:57839045-57839180
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTACTTTATGTATTTTTTAGGAA
3' ss Score
9.94
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AGCTTAGAAACCCAAATATCAGAATGGAATTTGCAGTTGAAAAAGAATAAGTATGAGGCTGTAGCAATGAAAGAATCAAGTAGGCAAAAAACTATTGCTCTAAAAAAGGCATCTAAAATTTACAAACAAAGGATTGAACATTTTACTGGAGACATGGAAAACCTTACTTCCCAAATTAGAGAGCAG
Seq A exon
GAAGCCAAGTTGTCTGAAACAGTTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATAGTAATAGAGAAAACTGAGTTGGAAGTTCAGATCGAAACAATGAAAAA
Seq C2 exon
GCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGAGCATGGAAAAATTTCATGTGAAGAAATTCTTAGAAAACTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907-'21-12,'21-11,23-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF115593=ADIP=PU(22.5=78.4)
C2:
PF115593=ADIP=FE(34.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTGTAGCAATGAAAGA
R:
TCTCAAGATTCAGAGTTTCATTTTCA
Band lengths:
255-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]