GgaEX6044346 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14941280-14944449:+
Coord C1 exon
chr8:14941280-14941465
Coord A exon
chr8:14942719-14942828
Coord C2 exon
chr8:14944314-14944449
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTAATTAATGTGTTCTGTAGGAA
3' ss Score
6.75
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ACTCTAGAGAAGAAAATAGCAGAGTGGAAACTTCAAATTGGTGAATACAAGCGTCAGATGTTGGCCTTGAAGAAAACAAGTGAGCAAAAAAAGGCTTATCTGAGAAGAGCAATTAGGTCCCAGAAACAAAAAACAGAATGCTTTGAAGAAGCTGTGGAAAATTTAACCTCCAGAGTAAAAGAACGT
Seq A exon
GAAGTGAAATTGTCTGAGATACTGTCAGCTTCTGATGTCTGGAAAAAACAACATGATAGAATGGTAGAAGAAAAGACAATGTTAGCAGTTCAGACAGAAGACCTAAAGAA
Seq C2 exon
GCAAATCACAAGCCTTTCTGAAGACCTGAAAAGAAAGGAGGAACTCAGAAGAAAGGCTAGTGAGGAACTTCTTGGAAAGCTAAATTCTGTTAACTCTGAAAATGAGAAGATTTATCTTGAAAATGAAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTGGAAACTTCAAATTGGT
R:
TCCAAGAAGTTCCTCACTAGCCT
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]