HsaEX0044613 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86826109-86861945:-
Coord C1 exon
chr1:86861716-86861945
Coord A exon
chr1:86838114-86838223
Coord C2 exon
chr1:86826109-86826219
Length
110 bp
Sequences
Splice sites
3' ss Seq
TACTTTTATGTATTTTTTAGGAA
3' ss Score
10
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CGGCAAGCAGGTCTAGGAATTCGCCTGGTTCCCACCTCGCGTCCCTTGCCTTCCTTCCTAGTCTACCCACTGTAGTGCCCCCTGCGTCCCGCTCCCTCCTAGCCGACTCAGAGCACAAGAAGGATTGCCACGGTTTCCATTGCAGCAGCCGTGGCGCCTCTGACCCTTTTTTTATATCGCGGCGACGGCGGGCTGTCGTCACGACGACGTGCGGACGCAGCGGCGGGGGC
Seq A exon
GAAGCCAAGTTGTCTGAAACAATTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATTGTGATAGAAAAAACCGAATTGGAAGTACAGATTGAAACAATGAAAAA
Seq C2 exon
ACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX2-8/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=PU(16.1=59.5),PF131661=AAA_13=PU(10.7=59.5)
C2:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=FE(26.3=100),PF131661=AAA_13=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGTCTAGGAATTCGCCT
R:
TCATCCTTCAAAGCAGCAAGTGT
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)