GgaEX6044346 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16709691-16712860:+
Coord C1 exon
chr8:16709691-16709876
Coord A exon
chr8:16711130-16711239
Coord C2 exon
chr8:16712725-16712860
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTAATTAATGTGTTCTGTAGGAA
3' ss Score
6.75
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ACTCTAGAGAAGAAAATAGCAGAGTGGAAACTTCAAATTGGTGAATACAAGCGTCAGATGTTGGCCTTGAAGAAAACAAGTGAGCAAAAAAAGGCTTATCTGAGAAGAGCAATTAGGTCCCAGAAACAAAAAACAGAATGCTTTGAAGAAGCTGTGGAAAATTTAACCTCCAGAGTAAAAGAACGT
Seq A exon
GAAGTGAAATTGTCTGAGATACTGTCAGCTTCTGATGTCTGGAAAAAACAACATGATAGAATGGTAGAAGAAAAGACAATGTTAGCAGTTCAGACAGAAGACCTAAAGAA
Seq C2 exon
GCAAATCACAAGCCTTTCTGAAGACCTGAAAAGAAAGGAGGAACTCAGAAGAAAGGCTAGTGAGGAACTTCTTGGAAAGCTAAATTCTGTTAACTCTGAAAATGAGAAGATTTATCTTGAAAATGAAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF048997=MbeD_MobD=PU(18.8=19.4)
A:
PF048997=MbeD_MobD=FE(56.2=100)
C2:
PF048997=MbeD_MobD=PD(21.9=30.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTGGAAACTTCAAATTGGT
R:
TCCAAGAAGTTCCTCACTAGCCT
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]