RnoEX0062097 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251011200-251018792:+
Coord C1 exon
chr2:251011200-251011385
Coord A exon
chr2:251017716-251017825
Coord C2 exon
chr2:251018657-251018792
Length
110 bp
Sequences
Splice sites
3' ss Seq
AATGCATTGTTTATTTTTAGGAA
3' ss Score
9.1
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTAAAAATGAATAAGCAAGAGGCTGTGGCCGTCAAAGAAGCCAGCAGGCAGAAGGCTGAAGCTCTGAAGAAAGCGTCCAAAGTGTACAGACAGAGGCTGAGACACTTTACAGGGGACATCGAGCAGCTCACGTCCCAAATCAGAGATCAG
Seq A exon
GAAGCCAAGTTGTCTGAAGCAGTCTCAGCTTCCAATGACTGGAAAAGTCGTTATGAGAAAATCGCAATAGAAAAAACTGAACTGGAAGTTCAGATCGAAACAATGAAGAA
Seq C2 exon
GCAAATCTCTCATCTTCTGGAAGACTTGAGGAAAATGGAAACTCATGGGAAAAATTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCTTAAATATTGAGAATGTGAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'14-18,'14-17,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=FE(61.0=100),PF0003816=Filament=PU(42.5=82.3)
A:
PF104734=CENP-F_leu_zip=PD(11.0=29.7),PF0003816=Filament=FE(30.0=100)
C2:
PF0003816=Filament=PD(25.8=67.4),PF115593=ADIP=PU(30.5=69.6),PF0017016=bZIP_1=PU(53.7=47.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGAAACCCAAATAGCCA
R:
ACATGAATTTTTCCCATGAGTTTCCA
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]