GgaEX0009698 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16711130-16713701:+
Coord C1 exon
chr8:16711130-16711239
Coord A exon
chr8:16712725-16712860
Coord C2 exon
chr8:16713591-16713701
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTGCTATCCAACAAGGCA
3' ss Score
4.02
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAGTGAAATTGTCTGAGATACTGTCAGCTTCTGATGTCTGGAAAAAACAACATGATAGAATGGTAGAAGAAAAGACAATGTTAGCAGTTCAGACAGAAGACCTAAAGAA
Seq A exon
GCAAATCACAAGCCTTTCTGAAGACCTGAAAAGAAAGGAGGAACTCAGAAGAAAGGCTAGTGAGGAACTTCTTGGAAAGCTAAATTCTGTTAACTCTGAAAATGAGAAGATTTATCTTGAAAATGAAAAACTAAAG
Seq C2 exon
GCTTGCCTTGCTGCTTTGGAAATCAGTACTGTTTCTGTTGAAAATGACCTGCTATGTCTGCAAGAAAAGACCAAGCTACAGGAAAACATTGTTGAAGACTGTAAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'15-17,'15-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF048997=MbeD_MobD=FE(56.2=100)
A:
PF048997=MbeD_MobD=PD(21.9=30.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAATTGTCTGAGATACTGTCA
R:
ACAGTCTTCAACAATGTTTTCCTGT
Band lengths:
210-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]