BtaEX6016795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57838189-57846131:+
Coord C1 exon
chr3:57838189-57838298
Coord A exon
chr3:57839045-57839180
Coord C2 exon
chr3:57846021-57846131
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTCTATGGTTTTTATAAAGGCA
3' ss Score
5.62
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GAAGCCAAGTTGTCTGAAACAGTTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATAGTAATAGAGAAAACTGAGTTGGAAGTTCAGATCGAAACAATGAAAAA
Seq A exon
GCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGAGCATGGAAAAATTTCATGTGAAGAAATTCTTAGAAAACTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAATTAAAG
Seq C2 exon
ACTACACTTGCTACTTTGAAGGATGAGATTGCCTCTGTTGAAAATGAACTCTTAGAATTGCAAGAAGTAGAAAAACAACAGAAAACCCTTATTGAAGTTTATAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907-'23-13,'23-12,24-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115593=ADIP=PU(22.5=78.4)
A:
PF115593=ADIP=FE(34.9=100)
C2:
PF115593=ADIP=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAAGTTGTCTGAAACAGT
R:
AAACTTCAATAAGGGTTTTCTGTTGT
Band lengths:
210-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]