HsaEX0044614 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86826109-86838223:-
Coord C1 exon
chr1:86838114-86838223
Coord A exon
chr1:86836701-86836836
Coord C2 exon
chr1:86826109-86826219
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTGTCATTGATTTTATAAAGGCA
3' ss Score
4.21
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAAGCCAAGTTGTCTGAAACAATTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATTGTGATAGAAAAAACCGAATTGGAAGTACAGATTGAAACAATGAAAAA
Seq A exon
GCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGACCATGGAAAAAATTCATGTGAAGAAATTCTTAGAAAAGTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAATTAAAG
Seq C2 exon
ACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX2-9/10=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=PU(16.1=59.5),PF131661=AAA_13=PU(10.7=59.5)
A:
PF0003816=Filament=FE(14.5=100),PF115593=ADIP=FE(32.8=100),PF131661=AAA_13=FE(22.0=100)
C2:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=FE(26.3=100),PF131661=AAA_13=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAAGTTGTCTGAAACAA
R:
ACTTCTTGCAATTCTGAGAGTTCA
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)