RnoEX0062098 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251017716-251020667:+
Coord C1 exon
chr2:251017716-251017825
Coord A exon
chr2:251018657-251018792
Coord C2 exon
chr2:251020557-251020667
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTCACTTATTTTATAAAGGCA
3' ss Score
4.63
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAAGCCAAGTTGTCTGAAGCAGTCTCAGCTTCCAATGACTGGAAAAGTCGTTATGAGAAAATCGCAATAGAAAAAACTGAACTGGAAGTTCAGATCGAAACAATGAAGAA
Seq A exon
GCAAATCTCTCATCTTCTGGAAGACTTGAGGAAAATGGAAACTCATGGGAAAAATTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCTTAAATATTGAGAATGTGAAATTAAAG
Seq C2 exon
AGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTTCAAGAAGTAGAAAAACGACAGAAAGCCCTCGTTGAAGGATACAGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'15-19,'15-18,17-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PD(11.0=29.7),PF0003816=Filament=FE(30.0=100)
A:
PF0003816=Filament=PD(25.8=67.4),PF115593=ADIP=PU(30.5=69.6),PF0017016=bZIP_1=PU(53.7=47.8)
C2:
PF0003816=Filament=FE(12.5=100),PF115593=ADIP=FE(35.0=100),PF0017016=bZIP_1=PD(41.5=45.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAAGTTGTCTGAAGCAGT
R:
GAGTTCTGTATCCTTCAACGAGGG
Band lengths:
218-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]