GgaEX0010813 @ galGal3
Exon Skipping
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23836672-23837249:+
Coord C1 exon
chr6:23836672-23836740
Coord A exon
chr6:23836944-23837015
Coord C2 exon
chr6:23837201-23837249
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTGGGTCTGTGTTTTGCAGCGA
3' ss Score
9.33
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTACCTGGATGGAAACCAGTTCACCCAGGTGCCGGGTCAGCTCTCCACCTTCAAGTACCTGCAGCTGGT
Seq A exon
CGATCTGAGCAACAACAGGATCAGCTCACTGAGCAACTCCTCCTTCACCAACATGAGCCAGCTCACCACCCT
Seq C2 exon
GATCCTCAGCTACAACTCCCTGCAGTGCATCCCTCCACTGGCCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622-'23-26,'23-25,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(53.5=100)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF127992=LRR_4=PD(32.6=82.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAAACCAGTTCACCC
R:
CGAAGGCCAGTGGAGGGAT
Band lengths:
111-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]