RnoEX6007316 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260870707-260874782:-
Coord C1 exon
chr1:260874714-260874782
Coord A exon
chr1:260872417-260872488
Coord C2 exon
chr1:260870707-260870778
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTTGCTTCTTTCCAGCGA
3' ss Score
9.21
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CTACTTAGATGGGAACCAGTTCACACTGGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTTGT
Seq A exon
CGACCTGAGCAACAACAAGATCAGCTCCTTAAGCAACTCTTCCTTCACCAACATGAGTCAGCTGACCACACT
Seq C2 exon
GATCCTCAGCTACAACGCCCTCCAGTGCATCCCCCCTCTGGCCTTCCAAGGACTTCGTTCACTGCGCTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065-'32-24,'32-23,33-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.8)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCACACTGGTTCCGGG
R:
CGCAGTGAACGAAGTCCTTGG
Band lengths:
119-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]