DreEX0073422 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:442380-442794:-
Coord C1 exon
chr13:442726-442794
Coord A exon
chr13:442561-442632
Coord C2 exon
chr13:442380-442451
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGATCTGACTGTGTTTCAGAGA
3' ss Score
8.48
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
GTATCTGGATGGGAACCAGCTGAGCACGGTGCCAAAGGAGCTGTCGTCCTTCAAGAGTCTGCAGCTGGT
Seq A exon
AGATTTGAGCAACAACAGGATCAGCTCTCTGACCAACTCCTCCTTCACCAACATGAGCCAGCTGACCACACT
Seq C2 exon
GATCCTGAGTTATAATGCTCTGCGCTGCATCCCCACTCTGGCCTTCAGTGGGCTGCGCTCGCTCCGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(50.0=100)
A:
PF127992=LRR_4=PD(37.0=68.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAGCTGAGCACGG
R:
GCCCACTGAAGGCCAGAGT
Band lengths:
111-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]