BtaEX6100008 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18168118-18173280:-
Coord C1 exon
chr26:18173212-18173280
Coord A exon
chr26:18170072-18170143
Coord C2 exon
chr26:18168118-18168189
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTGTCTTTTCCAGGGA
3' ss Score
13.79
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CTACCTGGATGGGAACCAGTTCACGCTGGTTCCAGCACAGCTGTCCACCTTCAAGTACCTGCAGCTTGT
Seq A exon
GGACCTGAGTAACAACAAGATCAGTTCCTTAAGCAATTCGTCCTTTACCAACATGAGCCAGCTGACCACTCT
Seq C2 exon
GATCCTCAGCTACAACTCCCTGCAGTGTATCCCTCCTCTGGCCTTCCAGGGGCTTCGCTCCCTGCGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.8)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCACGCTGGTTCCAG
R:
AAGGCCAGAGGAGGGATACAC
Band lengths:
98-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]