GgaEX0010866 @ galGal3
Exon Skipping
Gene
ENSGALG00000007656 | E1C7F6_CHICK
Description
NA
Coordinates
chr4:12178111-12189996:+
Coord C1 exon
chr4:12178111-12178695
Coord A exon
chr4:12187285-12187430
Coord C2 exon
chr4:12189949-12189996
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTCTTTCAAAACAGGTA
3' ss Score
10.7
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
ATCAAACAAACACCGTGAGGAGCAGGATGCCCCAGCAAGACAAAGCCAGGCTGTGAGCATCATGTATGTGAGTTACCTTTTGGATAAAGAGACCAGCATGTATCCAGGACCTGCAAGGTGCAGCAACAACAACCTGCCAGTGCAGAACTTTGTGCCTGCTCCCCCCTACTCAGACTACATGGGGTATCACCACGTGCCAGCTCCAGACAGCCACGGACAGCCCGCGGGAGCCTGGGGACCCCACTACGGCCCCCAGAGGGAGGACTGGAACGCTTACGGCCCGTGCCCAGGGCCCTCCGGCACGGCTGCTGCCGCACAGCTCAGCGGCTCCTCTCCTGGGCAGGGCTCCTACAGTCCAGCTGAGTACAGCTCCCTCCATCCCGCTGCACCCGGGGGGTTACCTCCTGCAGGCACCGTTGGCACACAGCAGGTCTCACCCACCAACCAAAGGCACAGCTCTTATGAATGGATGAGGAAAACGGTGCAATCCACTTCTACAG
Seq A exon
GTAAAACAAGAACAAGAGAGAAGTACCGAGTGGTTTACACAGATCATCAGAGATTAGAATTAGAGAAGGAATTTCATTACAACAGATACATTACAATCAGGAGGAAGTCTGAACTTGCTGCAAACCTAAGACTTTCCGAGAGACAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAATCGCAGAGCCAAAGAAAGAAAATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007656-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.769 A=0.204 C2=0.598
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=PU(98.5=91.2)
A:
PF047317=Caudal_act=PD(0.7=2.0),PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=15.3),PF053086=Mito_fiss_reg=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAACGCTTACGGCCC
R:
GCTCTGCGATTCTGGAACCAG
Band lengths:
265-411
Functional annotations
There are 0 annotated functions for this event