Special

GgaEX0011298 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr2:17867900-17898638:-
Coord C1 exon
chr2:17898543-17898638
Coord A exon
chr2:17891295-17891550
Coord C2 exon
chr2:17867900-17868078
Length
256 bp
Sequences
Splice sites
3' ss Seq
TTCACTTATCACAATGGTAGACT
3' ss Score
3.97
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
AAATATAAAGAGAAAGATAAACACAAGCAAAAATATAAGAAGCAGTCGGAGTCCTCACCGTCCTTGGTTCCATCTCTTACTGTAACTACAGAGAAA
Seq A exon
ACTTACACAAGCACTAGCAACAACTCCATGTCAGGCTCCTTGAAGCGTCTGGAAGATACTACGGCTCGATTTACAAATGCAAATTTCCAGGAAGTTTCTACACACGTTTCAAGTGGAAAAGATTCTTCAGAGGCTAGAGGGTCAGAGAGCAAAGGGAAGAAATCTGCAGGTCACAGCTCGGGTCAGAGGGGAAGAAAGCCTGGTGCTGGAAGAAATCCAGGAACAACTGTGACTGCAGCTAGCCCTTTTCAGCAAG
Seq C2 exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-8/21=7-13
Average complexity
C3
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=0.650
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACAAGCAAAAATATAAGAAGCA
R:
TTGCAGCAACAACAGTAGTTATAGA
Band lengths:
252-508
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]