RnoEX0054844 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84922670-84940529:+
Coord C1 exon
chr17:84922670-84922765
Coord A exon
chr17:84936615-84936875
Coord C2 exon
chr17:84939957-84940529
Length
261 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAATCAAAATGTTAGACA
3' ss Score
0.81
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AAATATAAAGAAAAGGACAAACACAAACCAAAACACAAGAAGCAACCCGAGCCATCACCCGCCTTGGTTCCTTCTTTGACTGTTACTACAGAAAAG
Seq A exon
ACATATACAAGCACTAGCAACAACTCCATATCTGGATCGTTGAAGCGCTTGGAAGATACCGCAGCAAGATTTACAAATGCAAATTTCCAGGAAGTGTCTGCCCACACCTCTAGTGGGAAAGATGTGTCAGAGGCAAGGTCAGAGGGCAAAGGGAAGAAATCTTCAGCTCACAGCTCAGGTCAAAGGGGAAGGAAGCCTGGTGGTGGAAGAAATCCAGGAACAAGANNNACNCGGTGTCAGCATCTAGCCCCTTTCCACAAG
Seq C2 exon
GCAGTTTTTCAGGAACTCCAGGCAGTGTAAAGTCATCTTCTGGAAGTTCAGTGCAGTCTCCCCAGGATTTCCTCAGCTTCACTGACTCGGACCTGCGGAATGACAGTTACACTCACACGCAGCCGCCACCGTCAACCAAAGATGTACATAAAGGGGAGCCTGGCAGCCAGGATGCAGGGGTGAACAGCTTTAGCTCTCTAGTTGGTCACCCTGGGACCTCAGGTGCGACTTCACAGCCGAAAAGCTTTGACAGCTCTCCTGGGGAGTTGGGCAGCTCCAGCCTTCCTACAGCAGGGTATAAGCGGGCTCAGACTTCTGGGGTAGAAGAGGAGGAAGCCGTGAAGGAAAAGAAACGGAAAGGGAATAAACAAAGCAAGCATGGCCCTGGCCGACCCAAAGGAAACAAGAACCAAGAAAATGTTTCTCACCTCTCGGTTTCTTCTGCTTCACCGACATCATCCGTGGCATCGGCTGCGGGGAGTGTGACAAGCTGTAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249_MULTIEX1-10/13=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.988
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTTGGTTCCTTCTTTGA
R:
TCCCCAGGAGAGCTGTCAAAG
Band lengths:
303-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]