Special

GgaEX0011298 @ galGal4

Exon Skipping

Gene
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17836698-17866970:-
Coord C1 exon
chr2:17866875-17866970
Coord A exon
chr2:17859627-17859882
Coord C2 exon
chr2:17836698-17836876
Length
256 bp
Sequences
Splice sites
3' ss Seq
TTCACTTATCACAATGGTAGACT
3' ss Score
3.97
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
AAATATAAAGAGAAAGATAAACACAAGCAAAAATATAAGAAGCAGTCGGAGTCCTCACCGTCCTTGGTTCCATCTCTTACTGTAACTACAGAGAAA
Seq A exon
ACTTACACAAGCACTAGCAACAACTCCATGTCAGGCTCCTTGAAGCGTCTGGAAGATACTACGGCTCGATTTACAAATGCAAATTTCCAGGAAGTTTCTACACACGTTTCAAGTGGAAAAGATTCTTCAGAGGCTAGAGGGTCAGAGAGCAAAGGGAAGAAATCTGCAGGTCACAGCTCGGGTCAGAGGGGAAGAAAGCCTGGTGCTGGAAGAAATCCAGGAACAACTGTGACTGCAGCTAGCCCTTTTCAGCAAG
Seq C2 exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX2-9/14=8-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=0.783
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACAAGCAAAAATATAAGAAGCA
R:
TTGCAGCAACAACAGTAGTTATAGA
Band lengths:
252-508
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]