GgaEX0012003 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19082549-19085960:+
Coord C1 exon
chr12:19082549-19082668
Coord A exon
chr12:19083651-19083845
Coord C2 exon
chr12:19085709-19085960
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACCACACTTCATTCTGGCAGGCT
3' ss Score
6.19
5' ss Seq
CAGGTTAAC
5' ss Score
1.61
Exon sequences
Seq C1 exon
GTTTTTGGATTATCTCTCAGATCTGTGCGTTTCCATGAACAAGTCTATTCCAGTAACACAGGAGTTGATTTGTAAAGCCGTACTGAATCCAGCAAATGCAGACATACTCATTGAAACGAA
Seq A exon
GCTGGTCCTCTCTCGATTTGAATTTGAAGAAGTGTCAAGTGGAGAAAATGCCTTGGAAGTTGGAGAAGATGAGGAAGAAGTGTGGCTATTCTGGAGAGACAGTAACAAGGAAATCCGCAGTAAGAGTATCAGAGAGTTGGCTCAGGATGCTAAGGAAGGGCAGAAGGAAGATCGGGACGTACTCAGCTATTACAG
Seq C2 exon
ATACCAGCTGAACCTCTTTGCCAGAATGTGCCTTGATCGGCAGTACTTGGCCATAAACGAGATTTCTGGCCAGCTGGACGTGGATCTCATTCTCCGCTGCATGTCTGATGAAAACTTGCCGTATGACCTGAGAGCGTCGTTCTGCCGGCTCATGCTGCACATGCACGTTGATCGTGACCCCCAGGAGCAGGTCACACCAGTGAAGTATGCACGGCTGTGGTCTGAGATACCTTCTGAAATCGCGATTGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(19.4=100)
A:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGATCTGTGCGTTTCCA
R:
AGAACGACGCTCTCAGGTCAT
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]