RnoEX6014540 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140415861-140420063:+
Coord C1 exon
chr4:140415861-140415980
Coord A exon
chr4:140417149-140417343
Coord C2 exon
chr4:140419812-140420063
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTCCTACGCTTTTTTCACAGGTT
3' ss Score
9.82
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTCTTGGATTACCTCTCTGACCTCTGTGTATCCATGAATAAGTCAATCCCTGTGACCCAGGAGCTCATTTGTAAAGCTGTGCTGAATCCCACCAATGCTGACATCCTGATTGAGACCAA
Seq A exon
GTTGGTTCTTTCTCGTTTTGAGTTTGAAGGCGTTTCCACCGGAGAGAATGCTCTGGAAGCTGGGGAAGATGAGGAAGAGGTGTGGCTGTTCTGGAGGGACAGCAACAAAGAGATCCGTAGCAAGAGTGTTAGGGAATTGGCACAAGATGCTAAAGAGGGACAGAAGGAAGACAGGGATGTCCTCAGCTACTACAG
Seq C2 exon
GTATCAGCTGAACCTCTTTGCAAGGATGTGTCTGGACCGCCAGTACCTGGCCATCAATGAAATATCCGGGCAGCTGGATGTTGACCTCATCCTCCGCTGCATGTCCGATGAGAACCTCCCCTATGACCTCAGAGCATCCTTTTGCCGCCTCATGCTTCACATGCATGTGGACCGAGATCCCCAGGAGCAGGTGACCCCTGTGAAATACGCCCGTCTGTGGTCAGAAATTCCCTCCGAGATCGCCATTGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'35-31,'35-30,36-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(19.4=100)
A:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATCCCACCAATGCTGA
R:
CACAGACGGGCGTATTTCACA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]