Special

GgaEX0012003 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18438913-18442324:+
Coord C1 exon
chr12:18438913-18439032
Coord A exon
chr12:18440015-18440209
Coord C2 exon
chr12:18442073-18442324
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACCACACTTCATTCTGGCAGGCT
3' ss Score
6.19
5' ss Seq
CAGGTTAAC
5' ss Score
1.61
Exon sequences
Seq C1 exon
GTTTTTGGATTATCTCTCAGATCTGTGCGTTTCCATGAACAAGTCTATTCCAGTAACACAGGAGTTGATTTGTAAAGCCGTACTGAATCCAGCAAATGCAGACATACTCATTGAAACGAA
Seq A exon
GCTGGTCCTCTCTCGATTTGAATTTGAAGAAGTGTCAAGTGGAGAAAATGCCTTGGAAGTTGGAGAAGATGAGGAAGAAGTGTGGCTATTCTGGAGAGACAGTAACAAGGAAATCCGCAGTAAGAGTATCAGAGAGTTGGCTCAGGATGCTAAGGAAGGGCAGAAGGAAGATCGGGACGTACTCAGCTATTACAG
Seq C2 exon
ATACCAGCTGAACCTCTTTGCCAGAATGTGCCTTGATCGGCAGTACTTGGCCATAAACGAGATTTCTGGCCAGCTGGACGTGGATCTCATTCTCCGCTGCATGTCTGATGAAAACTTGCCGTATGACCTGAGAGCGTCGTTCTGCCGGCTCATGCTGCACATGCACGTTGATCGTGACCCCCAGGAGCAGGTCACACCAGTGAAGTATGCACGGCTGTGGTCTGAGATACCTTCTGAAATCGCGATTGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=FE(19.4=100)
A:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGATCTGTGCGTTTCCA
R:
AGAACGACGCTCTCAGGTCAT
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]