GgaEX0012050 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12495449-12496178:+
Coord C1 exon
chr1:12495449-12495505
Coord A exon
chr1:12495627-12495715
Coord C2 exon
chr1:12496109-12496178
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAAACATGTTCTTTTTGCAGTGT
3' ss Score
8.25
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGTCAGCTTCCGCCAGTATACAGAGGAAGAAAGAGTGACTCACCTGTTACAGTCAG
Seq A exon
TGTCCAAGTATTTAGCCTTGCTAATTGAAATTCATCCCATTAATAATGTGAAAGTCCTAAAGGCTGTGGATAGCTGTGTTCGAGTGCAG
Seq C2 exon
TTTCTTTATCCAGTGGAAGACAGAAATAGTTCTACAGAAAGTCATCTTTTGCTCGTTTCAGAAGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGCTTCCGCCAGTATAC
R:
ATTTATCTTCTGAAACGAGCAAAAGA
Band lengths:
127-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]