HsaEX6008595 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:77011891-77026352:-
Coord C1 exon
chr7:77026299-77026352
Coord A exon
chr7:77016677-77016765
Coord C2 exon
chr7:77011891-77011960
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAGCCTTCTTTTCTCTGTAGGAT
3' ss Score
9.61
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTGCAAGTTTAGTTCAGTCTACTAAAGAAGGAAAAAGGAACGAACTTCAACCAG
Seq A exon
GATCAAAGTGCTTGACTTTGTTGGTTGAAATCCACCCTGTTAACAATGTGAAGGTTCTAAAGGCTGTGGATAGCTATATTTGGGTTCAG
Seq C2 exon
TTTCTCTACCCACATATTGAAAGTCATCCTCTTCCAGAGAACCATCTGTTACTGATTTCAGAAGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGTTTAGTTCAGTCTACTAAA
R:
TCTTCTGAAATCAGTAACAGATGGT
Band lengths:
119-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)