MmuEX6016089 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20713406-20727113:+
Coord C1 exon
chr5:20713406-20713459
Coord A exon
chr5:20723208-20723296
Coord C2 exon
chr5:20727044-20727113
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAGCCTCCTTTTCTCTGTAGGAT
3' ss Score
9.55
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGCGAGTTTCATTCAGTATACCACAGAGGGAGTAAAGAATGACCTTCAGCCAG
Seq A exon
GATCGAAGTGCCTAACTTTGCTGGTAGAAATACACCCTGTTAACAACGTGAAGGTTCTGAAAGCAGTGGATAGCTGTGTTTGGGTACAG
Seq C2 exon
TTCCTCTACCCACAAGCTGAAAGTCATCTTCTTCCACAGAACCACCTGCTACTGATCTCAGAAGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGTTTCATTCAGTATACCACA
R:
TCTCTTCTGAGATCAGTAGCAGGT
Band lengths:
120-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: