RnoEX6012357 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10485333-10498872:-
Coord C1 exon
chr4:10498822-10498872
Coord A exon
chr4:10489238-10489326
Coord C2 exon
chr4:10485333-10485402
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATCTTCCTTTTCTCTGTAGGAT
3' ss Score
11.3
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTGCAAGCTTCATTCAGTACACGGAAGGAGTAAGGAGTGAGCTTCAGCCAG
Seq A exon
GATCGAAGTGTCTAACTTTGCTGGTTGAAATCCACCCTGTCAACAACGTGACGGTTCTGAAAGCTGTGGATAGCTGCGTTTGGGTACAG
Seq C2 exon
TTCCTCTACCCACAAGCTGAAAGTCATCTTCTTGCACAGAACCACCTGTTACTGATTTCAGAAGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'4-10,'4-7,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGCTTCATTCAGTACACG
R:
TTCTCTTCTGAAATCAGTAACAGGTG
Band lengths:
119-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]