GgaEX0012052 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13685711-13687865:+
Coord C1 exon
chr1:13685711-13685772
Coord A exon
chr1:13687561-13687665
Coord C2 exon
chr1:13687772-13687865
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTGGGATTTTACTTACTAGGCT
3' ss Score
5.53
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATCTGGATGACAATGAGAAGAATGAAAAGCTGAAATTCAGTATTGTGACAAGGCTTCCCGAG
Seq A exon
GCTCTTGGTCTAAAGGCCCGTCAGTTCTGGGATCATCCAGTAAATGCTAATTTCCGTGCACGGAAGTATGTGAAACTTTTGCTTGAGAAGCTGGGGAATAGGCAG
Seq C2 exon
TGTAGCAGGCCTGTCCCTGAGAGACACCCAGTCTGTGTAGAATTTTTGCCTCTTAACTACCTGACTAATGTGCTGGCAGAGATAGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'35-40,'35-38,37-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATGACAATGAGAAGAATGA
R:
TTGACTCTCTATCTCTGCCAGCA
Band lengths:
154-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]