DreEX0036390 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20477521-20485088:-
Coord C1 exon
chr4:20485027-20485088
Coord A exon
chr4:20478029-20478133
Coord C2 exon
chr4:20477521-20477617
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTTTTTAAATAGCAT
3' ss Score
8.43
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATTTAGATAACAGTGATGCCAATGAGCAGCTGAAGTTCAGTATCCTGAAAAGACTTCCTGAG
Seq A exon
CATATAGATAAGAAAGTGAGCCAACGGTGGGATCATCCCATAACCTCTGCAAGCATCTCCAGAGAATACATCGGGTCATTGCTGGACAAACACTCAGAGAGCAAG
Seq C2 exon
GACTCTGCACTTTTGGACTACAGCAAGTCAAGTTTCTATCCTGATTTTCTACCTCTGAACTACCTCGCCAAGGTTCTCTCCAATAGGGAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAACAGTGATGCCAATGAGCA
R:
CCCTATTGGAGAGAACCTTGGC
Band lengths:
146-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]