MmuEX6016075 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20794406-20795962:+
Coord C1 exon
chr5:20794406-20794467
Coord A exon
chr5:20795607-20795708
Coord C2 exon
chr5:20795863-20795962
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCAACCTCACTTAGCTT
3' ss Score
4.75
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTGGACAATTCAGAGAAAAATGAACAACTGAAATTCAGCATCATTGTCCGGCTCCCTCCG
Seq A exon
CTTATTGGCCAGAAGGTCTGCCGGCTTTGGGACCACCCCATGAGTTCCAATATCATTTCACGGAACCATGTGGCCCGGCTGCTGAAAAACTACAGGAAAGAG
Seq C2 exon
CCTCGGAACTCCATGATTGACAAATCATCATTTCCGGTAGAATTTCTGCCTCTGAACTACTTCATCGAAATTCTGATGGGCCTGGAGTCCTCCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1),PF056127=DUF781=FE(22.5=100)
A:
PF056127=DUF781=FE(37.1=100)
C2:
PF056127=DUF781=PD(13.5=35.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGACAATTCAGAGAAAAATGAA
R:
GAGGACTCCAGGCCCATCAG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: