MmuEX6016075 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21288588-21290144:+
Coord C1 exon
chr5:21288588-21288649
Coord A exon
chr5:21289789-21289890
Coord C2 exon
chr5:21290045-21290144
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCAACCTCACTTAGCTT
3' ss Score
4.75
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTGGACAATTCAGAGAAAAATGAACAACTGAAATTCAGCATCATTGTCCGGCTCCCTCCG
Seq A exon
CTTATTGGCCAGAAGGTCTGCCGGCTTTGGGACCACCCCATGAGTTCCAATATCATTTCACGGAACCATGTGGCCCGGCTGCTGAAAAACTACAGGAAAGAG
Seq C2 exon
CCTCGGAACTCCATGATTGACAAATCATCATTTCCGGTAGAATTTCTGCCTCTGAACTACTTCATCGAAATTCTGATGGGCCTGGAGTCCTCCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGACAATTCAGAGAAAAATGAA
R:
GAGGACTCCAGGCCCATCAG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types