BtaEX6026927 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44146566-44148528:+
Coord C1 exon
chr4:44146566-44146627
Coord A exon
chr4:44148156-44148257
Coord C2 exon
chr4:44148429-44148528
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATTTGCAAAAATAGCTT
3' ss Score
3.44
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTGGACAATACAGAGAAAAATGAAAAACTAAAATTCAGCATCATTATGCGGCTTCCTCCG
Seq A exon
CTTACAGGTCAGAAGATCTGTCGACTTTGGGATCATCCTGTTAGTTCTAATATAATTTCCCGGAACCATGTAAAGCGACTGCTTCAGAACTACAACAAACAG
Seq C2 exon
CCCTGGAGTTCTGTAATGGACAAGTCGTCATTCAGTGTAGAATTTCTGCCTCTGAACTACTTCATTCACATCCTGACAGACATCGAGTCCTCCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430-'37-32,'37-31,38-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGACAATACAGAGAAAAATGAA
R:
CTGGATTGGAGGACTCGATGT
Band lengths:
162-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]