RnoEX0040227 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10424713-10426307:-
Coord C1 exon
chr4:10426246-10426307
Coord A exon
chr4:10424969-10425070
Coord C2 exon
chr4:10424713-10424812
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTCAACCTCACTCAGCTT
3' ss Score
3.57
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTGGATAATTCAGAGAAAAATGAAAAACTGAAATTTAGCATCATTGTCCGGCTTCCTCCG
Seq A exon
CTTATTGGCCAGAAGGTCTGTCGGCTTTGGGACCATCCCATGAGTTCCAACATCATTTCACGGAACCACGTGGCCCAGCTTCTGAAGAACTACAAGAAAGAG
Seq C2 exon
CCTCAGAGCTCTATGATTGACAAGTCATCATTTCCAGTAGAATTTCTTCCTCTGAACTACTTCATTGAAATTCTGATGCACCTGGAGTCCTCCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1),PF056127=DUF781=FE(22.7=100)
A:
PF056127=DUF781=FE(37.5=100)
C2:
PF056127=DUF781=PD(13.6=35.3)
Main Skipping Isoform:
ENSRNOT00000083964fB6267
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATTTAGCATCATTGTCCGGC
R:
AGGACTCCAGGTGCATCAGAA
Band lengths:
123-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]