GgaEX0013406 @ galGal3
Exon Skipping
Gene
ENSGALG00000009129 | DLX5_CHICK
Description
NA
Coordinates
chr2:24415562-24417820:-
Coord C1 exon
chr2:24417417-24417820
Coord A exon
chr2:24416409-24416593
Coord C2 exon
chr2:24415562-24416273
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCGCCCTTGCGCCCGTGCAGAGA
3' ss Score
7.03
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GCGCCGAGCCGCCTCCCCCGGCCATGTCCGCCTGAGCCCGGCGATCCGCGCTATGACAGCAGTGTTTGACAGAAGGGTCCCCGGCATCAGGTCCTCCGACTTCCAGCCGCCTTTCCAGAGCGCCGCAGCCATGCACCACCCGTCCCAGGAATCTCCCACTTTACCCGAGTCCTCGGCTACGGATTCCGACTACTACAGCCCGACGGGGGCGGCCCCGCACGGCTACTGCTCGCCTACCTCGGCTTCCTACGGCAAAGCGCTCAACCCCTACCAGTACCAGTACGGCATGAACGGCTCCGCCGGCACCTACCCCGCCAAAGCCTACGCGGACTACGGCTACGGCAGCCCCTACCACCAGTACGGAGGAGCCTACGGCCGCGGGCAAAGCTCCGCGGGGCAGCCAG
Seq A exon
AGAAGGAGGTGGCGGAGCCCGAGGTGAGGATGGTGAACGGCAAGCCAAAGAAAGTGCGCAAACCGCGGACTATTTATTCCAGCTTTCAGCTGGCGGCGTTGCAGAGGAGGTTCCAGAAGACCCAATACCTCGCCCTGCCCGAGCGGGCCGAGCTGGCCGCCTCGCTGGGACTCACGCAGACGCAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACAAAAGGTCCAAGATCAAGAAGATCATGAAGAACGGGGAGATGCCCCCGGAGCACAGCCCCAGCTCCAGCGACCCCATGGCCTGCAACTCCCCGCAGTCGCCGGCGGTGTGGGAACCTCAGGGCTCGTCGCGCTCCCTCGGCCACCACGGGCACGGGCACCCGCCCGCCGCCAACCCGTCCCCCGGCAGCTACCTGGAGAGCCCCTCGGCCTGGTACCCCGCCGCCAGCCCCCTCGGCTCCCACCTGCAGCCCCACGGCTCCCTACAGCATCCCTTGGCGCTGCCCTCCGGGACGATCTACTGAGGGCCGAACCCTCGTGCTTCTTTTGTATTCCGCTCCCTGGACTCCTGTGTTTTACTGTTAAGGAAGAATAACGAAAGGAATGCGGATGGGGGATTTTTAAAGGGAAACGAAACAAACAAACGACGACGACAACGACAAACAAACAAACAAACAAAAAAGGTTAAAATGTGTAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009129-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.277 C2=0.716
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=72.9)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=12.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGCTCGCCTACCTCGG
R:
GGCATCTCCCCGTTCTTCATG
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]